SPASCER: spatial transcriptomics annotation at single cell resolution

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Center for Computational Systems Medicine

Gene summary

Spatial pattern genes

Spatial pattern pathway

Cell cell interactions using single cell data

Cell-cell/spot-spot interactions using spatial data

Transcription factors events

Related drugs with this gene

Related diseases with this gene

Spatial pattern gene: GNG4 (spascer ID:2786)

Gene summary for GNG4

Gene summary
Gene information
SpeciesHuman
Gene symbol

GNG4

Gene ID

2786

Gene nameG protein subunit gamma 4
SynonymsHG3C
Cytomap1q42.3
Type of geneprotein-coding
Descriptionguanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4guanine nucleotide binding protein (G protein), gamma 4guanine nucleotide binding protein 4heterotrimeric guanine nucleotide-binding protein 3C
Modification date20220513
UniProtAcc

P50150


Gene ontology with evidence Inferred from Direct Assay (IDA) and Biological aspect of Ancestor (IBA).
GeneGO IDGO termPubMed IDCategory
GNG4

GO:0005834

heterotrimeric G-protein complex

21873635

Component
GNG4

GO:0007186

G protein-coupled receptor signaling pathway

21873635

Process
GNG4

GO:0031681

G-protein beta-subunit binding

21873635

Function

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Spatial pattern events for GNG4

spatial pattern gene list.
Gene symbolSpeciesTissueReplicationPMIDAdj p-value
GNG4HumanBladderrep_2 343854562.17e-14
GNG4HumanIntestinerep_colon1 344172251.95e-15
GNG4HumanLiverrep_liver1 344172251.08e-15
GNG4HumanLiverrep_liver2 344172256.98e-16

spatial pattern gene map.(click to enlarge the image in a new window)

H&E staining (if available)Singel gene map
Bladder_rep_2_H&E

Intestine_rep_colon1_H&E

Liver_rep_liver1_H&E

Liver_rep_liver2_H&E



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Spatial pattern pathway has GNG4 envolved


SymbolPathwaySpeciesTissue typeReplicationP-value
GNG4GOBP_G_Protein_Coupled_Receptor_Signaling_PathwayHumanBrainrep_1 2.8e-23
GNG4GOBP_Regulation_Of_G_Protein_Coupled_Receptor_Signaling_PathwayHumanBrainrep_1 2.8e-23
GNG4GOBP_Cell_GrowthHumanBrainrep_4 1.0e-14
GNG4GOBP_GrowthHumanBrainrep_4 1.0e-14
GNG4GOBP_Cell_GrowthHumanLiverrep_1 2.1e-52
GNG4GOBP_G_Protein_Coupled_Receptor_Signaling_PathwayHumanLiverrep_1 1.0e-70
GNG4GOBP_GrowthHumanLiverrep_1 2.1e-52
GNG4GOBP_Regulation_Of_G_Protein_Coupled_Receptor_Signaling_PathwayHumanLiverrep_1 1.0e-70
GNG4GOBP_Cell_GrowthHumanIntestinerep_colon2 1.5e-57
GNG4GOBP_GrowthHumanIntestinerep_colon2 1.5e-57
GNG4GOBP_Cell_GrowthHumanIntestineA3 1.3e-16
GNG4GOBP_GrowthHumanIntestineA3 3.3e-16
GNG4GOBP_Negative_Regulation_Of_Cell_GrowthHumanIntestineA3 2.6e-16
GNG4GOBP_Regulation_Of_G_Protein_Coupled_Receptor_Signaling_PathwayHumanIntestineA3 1.1e-07
GNG4GOBP_Regulation_Of_GrowthHumanIntestineA3 3.6e-10
GNG4GOBP_G_Protein_Coupled_Receptor_Signaling_PathwayHumanIntestineA8 1.4e-14
GNG4GOBP_Negative_Regulation_Of_GrowthHumanIntestineA8 3.4e-21
GNG4GOBP_G_Protein_Coupled_Receptor_Signaling_PathwayHumanUterusrep_26 3.5e-06
GNG4GOBP_Negative_Regulation_Of_Cell_GrowthHumanUterusrep_26 3.0e-09
GNG4GOBP_Negative_Regulation_Of_GrowthHumanUterusrep_26 2.4e-09
GNG4GOBP_Regulation_Of_G_Protein_Coupled_Receptor_Signaling_PathwayHumanUterusrep_26 4.8e-06
GNG4GOBP_Cell_GrowthHumanBreastrep_1 6.0e-15
GNG4GOBP_G_Protein_Coupled_Receptor_Signaling_PathwayHumanBreastrep_1 3.6e-09
GNG4GOBP_Regulation_Of_G_Protein_Coupled_Receptor_Signaling_PathwayHumanBreastrep_1 0.0e+00
GNG4GOBP_Regulation_Of_GrowthHumanBreastrep_1 2.3e-04
GNG4GOBP_GrowthHumanBreastrep_5 5.4e-12
GNG4GOBP_Cell_GrowthHumanSkinP9_rep3 4.1e-08
GNG4GOBP_G_Protein_Coupled_Receptor_Signaling_PathwayHumanLungrep_2 4.8e-08

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GNG4 function as liang/receptor in single cell data

TissueSourceSourceCellTargetTargetCellPMIDGroup

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GNG4 function as liang/receptor across spatial transcriptomics tissue

Interactions using deconvoluted spatial data.

LigandReceptor LR pairTissueReplication

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Transcription factor for GNG4 envolved

Transcription factor analysis using single cell data.
TFTissueGroupCell typesTarget genesRss score

Motif information.

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Related Drugs for GNG4

Approved drugs targeting this gene.
(DrugBank Version 5.1.9 2022-01-04)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for GNG4

Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease namePubmedsSource




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